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1

eGenomics: Cataloguing our complete genome collection

Dawn Field, George Garrity, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nick Thomson

Journal:

Comparative and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 88 KB

english, 2005

2

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

Kılıç, Sefa, Sagitova, Dinara M., Wolfish, Shoshannah, Bely, Benoit, Courtot, Mélanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan

Journal:

Year:

2016

Language:

english

File:

PDF, 963 KB

english, 2016

3

PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses

Bao, Yiming, Chetvernin, Vyacheslav, Tatusova, Tatiana

Journal:

Year:

2012

Language:

english

File:

PDF, 421 KB

english, 2012

4

Clustering analysis of proteins from microbial genomes at multiple levels of resolution

Zaslavsky, Leonid, Ciufo, Stacy, Fedorov, Boris, Tatusova, Tatiana

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.89 MB

english, 2016

5

Complete Chloroplast Genome of Argania spinosa: Structural Organization and Phylogenetic Relationships in Sapotaceae

Khayi, Slimane, Gaboun, Fatima, Pirro, Stacy, Tatusova, Tatiana, El Mousadik, Abdelhamid, Ghazal, Hassan, Mentag, Rachid

Journal:

Year:

2020

File:

PDF, 4.42 MB

2020

6

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

Tatiana A Tatusova, Thomas L Madden

Journal:

FEMS Microbiology Letters

Year:

1999

Language:

english

File:

PDF, 350 KB

english, 1999

7

Erratum to “BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences” [FEMS Microbiol. 174 (1999) 247–250]

Tatiana A. Tatusova, Thomas L. Madden

Journal:

FEMS Microbiology Letters

Year:

1999

File:

PDF, 333 KB

1999

8

Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes

Leda Cummings, Leigh Riley, Lori Black, Alexander Souvorov, Sergei Resenchuk, Ilya Dondoshansky, Tatiana Tatusova

Journal:

FEMS Microbiology Letters

Year:

2002

Language:

english

File:

PDF, 701 KB

english, 2002

9

The minimum information about a genome sequence (MIGS) specification

Field, Dawn, Garrity, George, Gray, Tanya, Morrison, Norman, Selengut, Jeremy, Sterk, Peter, Tatusova, Tatiana, Thomson, Nicholas, Allen, Michael J, Angiuoli, Samuel V

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 770 KB

english, 2008

10

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Pruitt, K. D., Tatusova, T., Maglott, D. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

11

Organelle genome resources at NCBI

Tyra G. Wolfsberg, Susan Schafer, Roman L. Tatusov, Tatiana A. Tatusova

Journal:

Trends in Biochemical Sciences

Year:

2001

Language:

english

File:

PDF, 378 KB

english, 2001

12

Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation

Leonid Zaslavsky, Yiming Bao, Tatiana A Tatusova

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 684 KB

english, 2008

13

The relationship of protein conservation and sequence length

David J Lipman, Alexander Souvorov, Eugene V Koonin, Anna R Panchenko, Tatiana A Tatusova

Journal:

BMC Evolutionary Biology

Year:

2002

Language:

english

File:

PDF, 332 KB

english, 2002

14

Virus variation resources at the National Center for Biotechnology Information: dengue virus

Wolfgang Resch, Leonid Zaslavsky, Boris Kiryutin, Michael Rozanov, Yiming Bao, Tatiana A Tatusova

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

15

Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes

Leda Cummings, Leigh Riley, Lori Black, Alexander Souvorov, Sergei Resenchuk, Ilya Dondoshansky, Tatiana Tatusova

Journal:

FEMS Microbiology Letters

Year:

2002

Language:

english

File:

PDF, 704 KB

english, 2002

16

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

Tatiana A Tatusova, Thomas L Madden

Journal:

FEMS Microbiology Letters

Year:

1999

Language:

english

File:

PDF, 352 KB

english, 1999

17

Erratum to “BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences” [FEMS Microbiol. 174 (1999) 247–250]

Tatiana A. Tatusova, Thomas L. Madden

Journal:

FEMS Microbiology Letters

Year:

1999

File:

PDF, 334 KB

1999

18

Splign: algorithms for computing spliced alignments with identification of paralogs

Yuri Kapustin, Alexander Souvorov, Tatiana Tatusova, David Lipman

Journal:

Year:

2008

Language:

english

File:

PDF, 631 KB

english, 2008

19

Reannotation of Shewanella oneidensis Genome

Daraselia, N., Dernovoy, D., Tian, Y., Borodovsky, M., Tatusov, R., Tatusova, T.

Journal:

Omics A Journal of Integrative Biology

Year:

2003

Language:

english

File:

PDF, 96 KB

english, 2003

20

NCBI Reference Sequences: current status, policy and new initiatives

Pruitt, K. D., Tatusova, T., Klimke, W., Maglott, D. R.

Journal:

Nucleic Acids Research

Year:

2009

Language:

english

File:

PDF, 96 KB

english, 2009

21

Concept of Sample in OMICS Technology

Morrison, Norman, Cochrane, Guy, Faruque, Nadeem, Tatusova, Tatiana, Tateno, Yoshio, Hancock, David, Field, Dawn

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 466 KB

english, 2006

22

[IEEE 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops - San Jose, CA, USA (2007.11.2-2007.11.4)] 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Multiresolution approaches to representation and visualization of large influenza virus sequence datasets

Leonid Zaslavsky,, Yiming Bao,, Tatusova, Tatiana A.

Year:

2007

Language:

english

File:

PDF, 703 KB

english, 2007

23

RefSeq microbial genomes database: new representation and annotation strategy

Tatusova, T., Ciufo, S., Fedorov, B., O'Neill, K., Tolstoy, I.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 6.33 MB

english, 2014

24

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

Angiuoli, Samuel V., Gussman, Aaron, Klimke, William, Cochrane, Guy, Field, Dawn, Garrity, George M., Kodira, Chinnappa D., Kyrpides, Nikos, Madupu, Ramana, Markowitz, Victor, Tatusova, Tatiana, Thoms

Journal:

Omics A Journal of Integrative Biology

Year:

2008

Language:

english

File:

PDF, 71 KB

english, 2008

25

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Atlanta, GA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - An approach to phylogenomic analysis of bacterial pathogens

Zaslavsky, L., Chetvernin, V., Dernovoy, D., Fedorov, B., Klimke, W., Souvorov, A., Tolstoy, I., Tatusova, T., Lipman, D. J.

Year:

2011

Language:

english

File:

PDF, 608 KB

english, 2011

26

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

Pruitt, K. D., Tatusova, T., Brown, G. R., Maglott, D. R.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

27

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

Barrett, T., Clark, K., Gevorgyan, R., Gorelenkov, V., Gribov, E., Karsch-Mizrachi, I., Kimelman, M., Pruitt, K. D., Resenchuk, S., Tatusova, T., Yaschenko, E., Ostell, J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.76 MB

english, 2012

28

The Influenza Virus Resource at the National Center for Biotechnology Information

Bao, Y., Bolotov, P., Dernovoy, D., Kiryutin, B., Zaslavsky, L., Tatusova, T., Ostell, J., Lipman, D.

Journal:

Journal of Virology

Year:

2008

Language:

english

File:

PDF, 822 KB

english, 2008

29

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

Bao, Yiming, Chetvernin, Vyacheslav, Tatusova, Tatiana

Journal:

Archives of Virology

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

30

National Center for Biotechnology Information Viral Genomes Project

Bao, Y., Federhen, S., Leipe, D., Pham, V., Resenchuk, S., Rozanov, M., Tatusov, R., Tatusova, T.

Journal:

Journal of Virology

Year:

2004

Language:

english

File:

PDF, 3.15 MB

english, 2004

31

Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome

Hiller, N. L., Janto, B., Hogg, J. S., Boissy, R., Yu, S., Powell, E., Keefe, R., Ehrlich, N. E., Shen, K., Hayes, J., Barbadora, K., Klimke, W., Dernovoy, D., Tatusova, T., Parkhill, J., Bentley, S.

Journal:

Journal of Bacteriology

Year:

2007

Language:

english

File:

PDF, 728 KB

english, 2007

32

A web-based genotyping resource for viral sequences

Rozanov, M., Plikat, U., Chappey, C., Kochergin, A., Tatusova, T.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 279 KB

english, 2004

33

Gene: a gene-centered information resource at NCBI

Brown, G. R., Hem, V., Katz, K. S., Ovetsky, M., Wallin, C., Ermolaeva, O., Tolstoy, I., Tatusova, T., Pruitt, K. D., Maglott, D. R., Murphy, T. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

34

Entrez Gene: gene-centered information at NCBI

Maglott, D., Ostell, J., Pruitt, K. D., Tatusova, T.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.13 MB

english, 2011

35

Virus Variation Resource--recent updates and future directions

Brister, J. R., Bao, Y., Zhdanov, S. A., Ostapchuck, Y., Chetvernin, V., Kiryutin, B., Zaslavsky, L., Kimelman, M., Tatusova, T. A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 10.46 MB

english, 2014

36

FLAN: a web server for influenza virus genome annotation

Bao, Y., Bolotov, P., Dernovoy, D., Kiryutin, B., Tatusova, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1008 KB

english, 2007

37

eGenomics: Cataloguing Our Complete Genome Collection III

Field, Dawn, Garrity, George, Gray, Tanya, Selengut, Jeremy, Sterk, Peter, Thomson, Nick, Tatusova, Tatiana, Cochrane, Guy, Glöckner, Frank Oliver, Kottmann, Renzo, Lister, Allyson L., Tateno, Yoshio,

Journal:

Comparative and Functional Genomics

Year:

2007

Language:

english

File:

PDF, 149 KB

english, 2007

38

Complete genomes in WWW Entrez: data representation and analysis

Tatusova, T. A., Karsch-Mizrachi, I., Ostell, J. A.

Journal:

Year:

1999

Language:

english

File:

PDF, 289 KB

english, 1999

39

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Bacterial pan-genomes

Zaslavsky, Leonid, Fedorov, Boris, Tatusova, Tatiana

Year:

2007

Language:

english

File:

PDF, 190 KB

english, 2007

40

RefSeq microbial genomes database: new representation and annotation strategy

Tatusova, T., Ciufo, S., Fedorov, B., O'Neill, K., Tolstoy, I.

Journal:

Nucleic Acids Research

Year:

2015

File:

PDF, 26 KB

2015

41

Assembly: a resource for assembled genomes at NCBI

Kitts, Paul A., Church, Deanna M., Thibaud-Nissen, Françoise, Choi, Jinna, Hem, Vichet, Sapojnikov, Victor, Smith, Robert G., Tatusova, Tatiana, Xiang, Charlie, Zherikov, Andrey, DiCuccio, Michael, Mu

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.04 MB

english, 2016

42

Entrez Gene: gene-centered information at NCBI

Maglott, D., Ostell, J., Pruitt, K. D., Tatusova, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.87 MB

english, 2007

43

Solving the Problem: Genome Annotation Standards before the Data Deluge

Klimke, William, O'Donovan, Claire, White, Owen, Brister, J. Rodney, Clark, Karen, Fedorov, Boris, Mizrachi, Ilene, Pruitt, Kim D., Tatusova, Tatiana

Journal:

Standards in Genomic Sciences

Year:

2011

Language:

english

File:

PDF, 1009 KB

english, 2011

44

NCBI prokaryotic genome annotation pipeline

Tatusova, Tatiana, DiCuccio, Michael, Badretdin, Azat, Chetvernin, Vyacheslav, Nawrocki, Eric P., Zaslavsky, Leonid, Lomsadze, Alexandre, Pruitt, Kim D., Borodovsky, Mark, Ostell, James

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.71 MB

english, 2016

45

Plant Genome Resources at the National Center for Biotechnology Information

David L. Wheeler, Brian Smith-White, Vyacheslav Chetvernin, Sergei Resenchuk, Susan M. Dombrowski, Steven W. Pechous, Tatiana Tatusova and James Ostell

Journal:

PLANT PHYSIOLOGY

Year:

2005

Language:

english

File:

PDF, 2.54 MB

english, 2005

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